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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0009s1100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SRS | ||||||||
Protein Properties | Length: 294aa MW: 31583.1 Da PI: 9.1782 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 179.8 | 1.2e-55 | 81 | 242 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalss 88 +C+dCGn+akk+C+++RCRtCCks g++C+th+kstWvpaa+rrer + ++++ kr+r++ +++s++ s SapurV1A.0009s1100.1.p 81 RACRDCGNRAKKECQYRRCRTCCKSGGYECTTHLKSTWVPAARRRERLGYSSGGGGGGSSASssggGCIGGKRPRDN-VNATSKSFS 166 57*********************************************877766544433333345633445566655.222222222 PP DUF702 89 tklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+ ++a ++ +l+t s lP +v+++avfrcvrv++++ g +e+aY++ v+i+GhvfkG+LydqG++e SapurV1A.0009s1100.1.p 167 TSNNNAAASLNLDTGSsyqdgsfkqsLPVQVRAPAVFRCVRVTAINGGGAEVAYEAKVNISGHVFKGFLYDQGINE 242 33333333333333334555555557***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.0E-53 | 81 | 241 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.4E-25 | 83 | 124 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-23 | 193 | 240 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MLGLHNILFI APPPSSCNHQ QPPQAPSTHR ITDTNDQYGI ADNQESWTTL KKYPQESSFL 60 ERRALNAVED CDTAINIGPA RACRDCGNRA KKECQYRRCR TCCKSGGYEC TTHLKSTWVP 120 AARRRERLGY SSGGGGGGSS ASSSGGGCIG GKRPRDNVNA TSKSFSTSNN NAAASLNLDT 180 GSSYQDGSFK QSLPVQVRAP AVFRCVRVTA INGGGAEVAY EAKVNISGHV FKGFLYDQGI 240 NEKKLFPCNS KRDSSERNRD SSSPVVDPSE AYTATGNQRL LEVFVISRLR GGA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303931.2 | 1e-156 | hypothetical protein POPTR_0003s19550g | ||||
Swissprot | Q94CK9 | 9e-47 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | B9GWY7 | 1e-156 | B9GWY7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s19550.1 | 1e-156 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-42 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0009s1100.1.p |