PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s1100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SRS
Protein Properties Length: 294aa    MW: 31583.1 Da    PI: 9.1782
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s1100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702179.81.2e-55812426154
                  DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalss 88 
                              +C+dCGn+akk+C+++RCRtCCks g++C+th+kstWvpaa+rrer    +      ++++         kr+r++  +++s++ s
  SapurV1A.0009s1100.1.p  81 RACRDCGNRAKKECQYRRCRTCCKSGGYECTTHLKSTWVPAARRRERLGYSSGGGGGGSSASssggGCIGGKRPRDN-VNATSKSFS 166
                             57*********************************************877766544433333345633445566655.222222222 PP

                  DUF702  89 tklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                             t+ ++a ++ +l+t s          lP +v+++avfrcvrv++++ g +e+aY++ v+i+GhvfkG+LydqG++e
  SapurV1A.0009s1100.1.p 167 TSNNNAAASLNLDTGSsyqdgsfkqsLPVQVRAPAVFRCVRVTAINGGGAEVAYEAKVNISGHVFKGFLYDQGINE 242
                             33333333333333334555555557***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-5381241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.4E-2583124IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-23193240IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLGLHNILFI APPPSSCNHQ QPPQAPSTHR ITDTNDQYGI ADNQESWTTL KKYPQESSFL  60
ERRALNAVED CDTAINIGPA RACRDCGNRA KKECQYRRCR TCCKSGGYEC TTHLKSTWVP  120
AARRRERLGY SSGGGGGGSS ASSSGGGCIG GKRPRDNVNA TSKSFSTSNN NAAASLNLDT  180
GSSYQDGSFK QSLPVQVRAP AVFRCVRVTA INGGGAEVAY EAKVNISGHV FKGFLYDQGI  240
NEKKLFPCNS KRDSSERNRD SSSPVVDPSE AYTATGNQRL LEVFVISRLR GGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303931.21e-156hypothetical protein POPTR_0003s19550g
SwissprotQ94CK99e-47LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLB9GWY71e-156B9GWY7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19550.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-42Lateral root primordium (LRP) protein-related